HL_6P5N_117

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5N_117 not in the Motif Atlas

Geometric match to HL_9PN5_105

Geometric discrepancy: 0.3176

The information below is about HL_9PN5_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6P5N|1|5|G|5020
6P5N|1|5|C|5021
6P5N|1|5|U|5022
6P5N|1|5|G|5028
6P5N|1|5|C|5029

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AU

eL22

Chain J

eS8