HL_6PC8_005

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.155

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6PC8|1|I|U|158
6PC8|1|I|G|159
6PC8|1|I|A|160
6PC8|1|I|A|161
6PC8|1|I|U|162
6PC8|1|I|C|163
6PC8|1|I|C|164
6PC8|1|I|A|165
6PC8|1|I|U|166
6PC8|1|I|A|167
6PC8|1|I|G|168

Current chains

Chain I

23S ribosomal RNA

Nearby chains