HL_6PC8_012

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6PC8|1|I|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1509

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6PC8|1|I|A|382
6PC8|1|I|C|383
6PC8|1|I|A|384
6PC8|1|I|C|385
6PC8|1|I|G|386
6PC8|1|I|U|387
6PC8|1|I|G|388
6PC8|1|I|G|389
6PC8|1|I|U|390
6PC8|1|I|A|391
6PC8|1|I|U|392

Current chains

Chain I

23S ribosomal RNA

Nearby chains