HL_6PC8_022

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

U(1MG)(PSU)(5MU)GAAAAA

Length

10 nucleotides

Bulged bases

6PC8|1|I|A|751, 6PC8|1|I|A|752

QA status

Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_022 not in the Motif Atlas

Homologous match to HL_5J7L_155

Geometric discrepancy: 0.1263

The information below is about HL_5J7L_155

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6PC8|1|I|U|744
6PC8|1|I|1MG|745
6PC8|1|I|PSU|746
6PC8|1|I|5MU|747
6PC8|1|I|G|748
6PC8|1|I|A|749
6PC8|1|I|A|750
6PC8|1|I|A|751
6PC8|1|I|A|752
6PC8|1|I|A|753

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3