HL_6PCQ_012

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6PCQ|1|I|G|386, 6PCQ|1|I|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCQ_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1272

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6PCQ|1|I|A|382
6PCQ|1|I|C|383
6PCQ|1|I|A|384
6PCQ|1|I|C|385
6PCQ|1|I|G|386
6PCQ|1|I|U|387
6PCQ|1|I|G|388
6PCQ|1|I|G|389
6PCQ|1|I|U|390
6PCQ|1|I|A|391
6PCQ|1|I|U|392

Current chains

Chain I

23S ribosomal RNA

Nearby chains