HL_6PCS_012

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6PCS|1|I|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCS_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1262

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6PCS|1|I|A|382
6PCS|1|I|C|383
6PCS|1|I|A|384
6PCS|1|I|C|385
6PCS|1|I|G|386
6PCS|1|I|U|387
6PCS|1|I|G|388
6PCS|1|I|G|389
6PCS|1|I|U|390
6PCS|1|I|A|391
6PCS|1|I|U|392

Current chains

Chain I

23S ribosomal RNA

Nearby chains