HL_6PCT_005

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCT_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1481

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6PCT|1|I|U|158
6PCT|1|I|G|159
6PCT|1|I|A|160
6PCT|1|I|A|161
6PCT|1|I|U|162
6PCT|1|I|C|163
6PCT|1|I|C|164
6PCT|1|I|A|165
6PCT|1|I|U|166
6PCT|1|I|A|167
6PCT|1|I|G|168

Current chains

Chain I

23S ribosomal RNA

Nearby chains