HL_6PCT_012

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6PCT|1|I|G|386, 6PCT|1|I|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCT_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1278

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6PCT|1|I|A|382
6PCT|1|I|C|383
6PCT|1|I|A|384
6PCT|1|I|C|385
6PCT|1|I|G|386
6PCT|1|I|U|387
6PCT|1|I|G|388
6PCT|1|I|G|389
6PCT|1|I|U|390
6PCT|1|I|A|391
6PCT|1|I|U|392

Current chains

Chain I

23S ribosomal RNA

Nearby chains