HL_6PPF_005

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAUUCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2724

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6PPF|1|A|U|159
6PPF|1|A|G|160
6PPF|1|A|A|161
6PPF|1|A|A|162
6PPF|1|A|U|163
6PPF|1|A|U|164
6PPF|1|A|C|165
6PPF|1|A|A|166
6PPF|1|A|U|167
6PPF|1|A|A|168
6PPF|1|A|G|169

Current chains

Chain A

23S rRNA

Nearby chains