HL_6PPF_013

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACACGUGAAAU

Length

11 nucleotides

Bulged bases

6PPF|1|A|G|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_013 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1935

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6PPF|1|A|A|429
6PPF|1|A|C|430
6PPF|1|A|A|431
6PPF|1|A|C|432
6PPF|1|A|G|433
6PPF|1|A|U|434
6PPF|1|A|G|435
6PPF|1|A|A|436
6PPF|1|A|A|437
6PPF|1|A|A|438
6PPF|1|A|U|439

Current chains

Chain A

23S rRNA

Nearby chains