HL_6PPF_042

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

6PPF|1|A|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_042 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.2471

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6PPF|1|A|A|1675
6PPF|1|A|G|1676
6PPF|1|A|A|1677
6PPF|1|A|G|1678
6PPF|1|A|A|1679
6PPF|1|A|A|1680
6PPF|1|A|U|1681

Current chains

Chain A

23S rRNA

Nearby chains