HL_6Q8Y_057

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6Q8Y|1|BQ|U|879, 6Q8Y|1|BQ|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_057 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0671

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6Q8Y|1|BQ|A|876
6Q8Y|1|BQ|C|877
6Q8Y|1|BQ|G|878
6Q8Y|1|BQ|U|879
6Q8Y|1|BQ|G|880
6Q8Y|1|BQ|C|881
6Q8Y|1|BQ|A|882
6Q8Y|1|BQ|A|883
6Q8Y|1|BQ|A|884
6Q8Y|1|BQ|U|885

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3