HL_6Q95_013

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

6Q95|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_013 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.1663

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6Q95|1|1|G|410
6Q95|1|1|G|411
6Q95|1|1|A|412
6Q95|1|1|C|413
6Q95|1|1|C|414
6Q95|1|1|A|415
6Q95|1|1|C|416
6Q95|1|1|C|417

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S ribosomal protein L15