HL_6Q95_026

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

6Q95|1|1|U|958, 6Q95|1|1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_026 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0929

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6Q95|1|1|C|955
6Q95|1|1|G|956
6Q95|1|1|A|957
6Q95|1|1|U|958
6Q95|1|1|A|959
6Q95|1|1|A|960
6Q95|1|1|C|961
6Q95|1|1|G|962

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16