HL_6Q95_028
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUAGAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 6Q95|1|1|U|1065, 6Q95|1|1|U|1066, 6Q95|1|1|A|1070
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q95_028 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.388
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6Q95|1|1|C|1064
6Q95|1|1|U|1065
6Q95|1|1|U|1066
6Q95|1|1|A|1067
6Q95|1|1|G|1068
6Q95|1|1|A|1069
6Q95|1|1|A|1070
6Q95|1|1|G|1071
6Q95|1|1|C|1072
6Q95|1|1|A|1073
6Q95|1|1|G|1074
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain I
- 50S RIBOSOMAL PROTEIN L10 AND L11
- Chain M
- 50S ribosomal protein L16
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