HL_6Q95_032

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6Q95|1|1|G|1325, 6Q95|1|1|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_032 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1126

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6Q95|1|1|G|1324
6Q95|1|1|G|1325
6Q95|1|1|U|1326
6Q95|1|1|C|1327
6Q95|1|1|G|1328
6Q95|1|1|U|1329
6Q95|1|1|C|1330

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22