HL_6Q95_049

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6Q95|1|1|A|2030, 6Q95|1|1|A|2031, 6Q95|1|1|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_049 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1131

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6Q95|1|1|G|2027
6Q95|1|1|U|2028
6Q95|1|1|G|2029
6Q95|1|1|A|2030
6Q95|1|1|A|2031
6Q95|1|1|G|2032
6Q95|1|1|A|2033
6Q95|1|1|U|2034
6Q95|1|1|G|2035
6Q95|1|1|C|2036

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L3