HL_6Q95_051

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

6Q95|1|1|G|2206, 6Q95|1|1|G|2207, 6Q95|1|1|U|2218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_051 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.1428

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6Q95|1|1|C|2205
6Q95|1|1|G|2206
6Q95|1|1|G|2207
6Q95|1|1|A|2208
6Q95|1|1|U|2218
6Q95|1|1|G|2219

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28