HL_6Q95_052
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6Q95|1|1|G|2250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q95_052 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.1374
- The information below is about HL_7A0S_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6Q95|1|1|C|2248
6Q95|1|1|U|2249
6Q95|1|1|G|2250
6Q95|1|1|G|2251
6Q95|1|1|G|2252
6Q95|1|1|G|2253
6Q95|1|1|C|2254
6Q95|1|1|G|2255
6Q95|1|1|G|2256
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
Coloring options: