HL_6Q95_073

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

6Q95|1|2|U|202, 6Q95|1|2|U|203, 6Q95|1|2|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_073 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.5979

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

6Q95|1|2|G|200
6Q95|1|2|C|201
6Q95|1|2|U|202
6Q95|1|2|U|203
6Q95|1|2|U|204
6Q95|1|2|G|216
6Q95|1|2|C|217

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains