HL_6Q95_076

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

6Q95|1|2|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_076 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1356

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6Q95|1|2|C|320
6Q95|1|2|A|321
6Q95|1|2|C|322
6Q95|1|2|U|323
6Q95|1|2|G|324
6Q95|1|2|A|325
6Q95|1|2|G|326
6Q95|1|2|A|327
6Q95|1|2|C|328
6Q95|1|2|A|329
6Q95|1|2|C|330
6Q95|1|2|G|331
6Q95|1|2|G|332
6Q95|1|2|G|333

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20