HL_6Q95_089
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAGCAACGCG
- Length
- 12 nucleotides
- Bulged bases
- 6Q95|1|2|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q95_089 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.1057
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6Q95|1|2|C|962
6Q95|1|2|G|963
6Q95|1|2|A|964
6Q95|1|2|A|965
6Q95|1|2|G|966
6Q95|1|2|C|967
6Q95|1|2|A|968
6Q95|1|2|A|969
6Q95|1|2|C|970
6Q95|1|2|G|971
6Q95|1|2|C|972
6Q95|1|2|G|973
Current chains
- Chain 2
- 16S RIBOSOMAL RNA
Nearby chains
- Chain 5
- SsrA-binding protein
- Chain 7
- Transfer RNA; tRNA
- Chain n
- 30S ribosomal protein S9
- Chain o
- 30S ribosomal protein S10
- Chain r
- 30S ribosomal protein S13
- Chain s
- 30S ribosomal protein S14 type Z
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