HL_6Q95_104

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCUGCCGGGGG

Length

12 nucleotides

Bulged bases

6Q95|1|4|U|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q95_104 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2014

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6Q95|1|4|C|143
6Q95|1|4|C|144
6Q95|1|4|C|145
6Q95|1|4|U|146
6Q95|1|4|G|147
6Q95|1|4|C|148
6Q95|1|4|C|149
6Q95|1|4|G|150
6Q95|1|4|G|151
6Q95|1|4|G|152
6Q95|1|4|G|153
6Q95|1|4|G|154

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains