HL_6Q95_108
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 6Q95|1|7|G|19, 6Q95|1|7|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q95_108 not in the Motif Atlas
- Homologous match to HL_4V90_032
- Geometric discrepancy: 0.2541
- The information below is about HL_4V90_032
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6Q95|1|7|C|13
6Q95|1|7|A|14
6Q95|1|7|G|15
6Q95|1|7|C|16
6Q95|1|7|C|17
6Q95|1|7|U|17|||A
6Q95|1|7|G|18
6Q95|1|7|G|19
6Q95|1|7|U|20
6Q95|1|7|A|21
6Q95|1|7|G|22
Current chains
- Chain 7
- tRNA-fMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
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