HL_6Q95_112
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAUUUUUAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q95_112 not in the Motif Atlas
- Homologous match to HL_4V7M_039
- Geometric discrepancy: 0.4218
- The information below is about HL_4V7M_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6Q95|1|8|G|30
6Q95|1|8|A|31
6Q95|1|8|U|32
6Q95|1|8|U|33
6Q95|1|8|U|34
6Q95|1|8|U|35
6Q95|1|8|U|36
6Q95|1|8|A|37
6Q95|1|8|A|38
6Q95|1|8|U|39
6Q95|1|8|C|40
Current chains
- Chain 8
- tRNA-Phe
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 7
- Transfer RNA; tRNA
- Chain 9
- mRNA
- Chain l
- 30S ribosomal protein S7
- Chain p
- 30S ribosomal protein S11
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