HL_6Q97_024

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAACCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q97_024 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3201

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6Q97|1|1|C|885
6Q97|1|1|A|886
6Q97|1|1|A|887
6Q97|1|1|C|888
6Q97|1|1|C|889
6Q97|1|1|C|890
6Q97|1|1|G|891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA

Chain r

30S ribosomal protein S13