HL_6Q97_031
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- 6Q97|1|1|A|1284, 6Q97|1|1|A|1285, 6Q97|1|1|A|1287, 6Q97|1|1|G|1288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q97_031 not in the Motif Atlas
- Homologous match to HL_5J7L_165
- Geometric discrepancy: 0.2921
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6Q97|1|1|G|1281
6Q97|1|1|U|1282
6Q97|1|1|G|1283
6Q97|1|1|A|1284
6Q97|1|1|A|1285
6Q97|1|1|A|1286
6Q97|1|1|A|1287
6Q97|1|1|G|1288
6Q97|1|1|C|1289
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
Coloring options: