HL_6Q97_075

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q97_075 not in the Motif Atlas

Geometric match to HL_3TUP_001

Geometric discrepancy: 0.3636

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6Q97|1|2|G|258
6Q97|1|2|G|259
6Q97|1|2|G|260
6Q97|1|2|U|261
6Q97|1|2|A|262
6Q97|1|2|A|263
6Q97|1|2|C|264
6Q97|1|2|G|265
6Q97|1|2|G|266
6Q97|1|2|C|267
6Q97|1|2|U|268

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain v

30S ribosomal protein S17

Chain y

30S ribosomal protein S20