HL_6Q97_086
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUUAGAUACCC
- Length
- 13 nucleotides
- Bulged bases
- 6Q97|1|2|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q97_086 not in the Motif Atlas
- Geometric match to HL_6CZR_088
- Geometric discrepancy: 0.1963
- The information below is about HL_6CZR_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6Q97|1|2|G|785
6Q97|1|2|G|786
6Q97|1|2|A|787
6Q97|1|2|U|788
6Q97|1|2|U|789
6Q97|1|2|A|790
6Q97|1|2|G|791
6Q97|1|2|A|792
6Q97|1|2|U|793
6Q97|1|2|A|794
6Q97|1|2|C|795
6Q97|1|2|C|796
6Q97|1|2|C|797
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 7
- Transfer RNA; tRNA
- Chain 8
- Transfer RNA; tRNA
- Chain 9
- mRNA
- Chain p
- 30S ribosomal protein S11
- Chain z
- 30S ribosomal protein S21
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