HL_6Q97_106
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUCAACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q97_106 not in the Motif Atlas
- Homologous match to HL_4V8Q_110
- Geometric discrepancy: 0.5627
- The information below is about HL_4V8Q_110
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6Q97|1|4|G|340
6Q97|1|4|U|341
6Q97|1|4|U|342
6Q97|1|4|C|343
6Q97|1|4|A|344
6Q97|1|4|A|345
6Q97|1|4|C|346
6Q97|1|4|U|347
6Q97|1|4|C|348
Current chains
- Chain 4
- transfer-messenger RNA (tmRNA)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
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