HL_6Q98_009

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6Q98|1|1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.2931

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6Q98|1|1|C|305
6Q98|1|1|U|306
6Q98|1|1|G|307
6Q98|1|1|G|308
6Q98|1|1|A|309
6Q98|1|1|A|310
6Q98|1|1|A|311
6Q98|1|1|G|312

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24