HL_6Q98_013

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6Q98|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1034

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6Q98|1|1|G|410
6Q98|1|1|G|411
6Q98|1|1|A|412
6Q98|1|1|C|413
6Q98|1|1|C|414
6Q98|1|1|A|415
6Q98|1|1|U|416
6Q98|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains