HL_6Q98_029

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

6Q98|1|1|U|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_029 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3947

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6Q98|1|1|C|1092
6Q98|1|1|G|1093
6Q98|1|1|U|1094
6Q98|1|1|A|1095
6Q98|1|1|A|1096
6Q98|1|1|U|1097
6Q98|1|1|A|1098
6Q98|1|1|G|1099

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain I

50S ribosomal protein L11

Chain f

50S ribosomal protein L36