HL_6Q98_036
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGACGGUUG
- Length
- 9 nucleotides
- Bulged bases
- 6Q98|1|1|A|1453, 6Q98|1|1|C|1454
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q98_036 not in the Motif Atlas
- Homologous match to HL_5J7L_169
- Geometric discrepancy: 0.271
- The information below is about HL_5J7L_169
- Detailed Annotation
- Mini UNCG with extended bulge
- Broad Annotation
- Mini UNCG with extended bulge
- Motif group
- HL_22622.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Q98|1|1|C|1451
6Q98|1|1|G|1452
6Q98|1|1|A|1453
6Q98|1|1|C|1454
6Q98|1|1|G|1455
6Q98|1|1|G|1456
6Q98|1|1|U|1457
6Q98|1|1|U|1458
6Q98|1|1|G|1459
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L17
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