HL_6Q98_043

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6Q98|1|1|U|1729, 6Q98|1|1|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q98_043 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3543

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6Q98|1|1|C|1727
6Q98|1|1|C|1728
6Q98|1|1|U|1729
6Q98|1|1|C|1730
6Q98|1|1|G|1731
6Q98|1|1|C|1732
6Q98|1|1|G|1733

Current chains

Chain 1

23S ribosomal RNA

Nearby chains