HL_6Q98_075
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GGUAACGGC
- Length
- 9 nucleotides
- Bulged bases
- 6Q98|1|2|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q98_075 not in the Motif Atlas
- Homologous match to HL_5J7L_006
- Geometric discrepancy: 0.2314
- The information below is about HL_5J7L_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6Q98|1|2|G|259
6Q98|1|2|G|260
6Q98|1|2|U|261
6Q98|1|2|A|262
6Q98|1|2|A|263
6Q98|1|2|C|264
6Q98|1|2|G|265
6Q98|1|2|G|266
6Q98|1|2|C|267
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain v
- 30S ribosomal protein S17
- Chain y
- 30S ribosomal protein S20
Coloring options: