HL_6Q98_090
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGAU(2MG)(5MC)AACGCG
- Length
- 12 nucleotides
- Bulged bases
- 6Q98|1|2|A|968, 6Q98|1|2|G|971
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q98_090 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3094
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Q98|1|2|C|962
6Q98|1|2|G|963
6Q98|1|2|A|964
6Q98|1|2|U|965
6Q98|1|2|2MG|966
6Q98|1|2|5MC|967
6Q98|1|2|A|968
6Q98|1|2|A|969
6Q98|1|2|C|970
6Q98|1|2|G|971
6Q98|1|2|C|972
6Q98|1|2|G|973
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 5
- SsrA-binding protein
- Chain n
- 30S ribosomal protein S9
- Chain o
- 30S ribosomal protein S10
- Chain r
- 30S ribosomal protein S13
- Chain s
- 30S ribosomal protein S14
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