HL_6Q98_093
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GGGUUAAGUCCC
- Length
- 12 nucleotides
- Bulged bases
- 6Q98|1|2|G|1094
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q98_093 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.1866
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6Q98|1|2|G|1087
6Q98|1|2|G|1088
6Q98|1|2|G|1089
6Q98|1|2|U|1090
6Q98|1|2|U|1091
6Q98|1|2|A|1092
6Q98|1|2|A|1093
6Q98|1|2|G|1094
6Q98|1|2|U|1095
6Q98|1|2|C|1096
6Q98|1|2|C|1097
6Q98|1|2|C|1098
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S2
- Chain l
- 30S ribosomal protein S7
- Chain z
- 30S ribosomal protein S21
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