HL_6Q9A_012

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6Q9A|1|1|G|386, 6Q9A|1|1|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2342

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6Q9A|1|1|A|382
6Q9A|1|1|C|383
6Q9A|1|1|A|384
6Q9A|1|1|C|385
6Q9A|1|1|G|386
6Q9A|1|1|U|387
6Q9A|1|1|G|388
6Q9A|1|1|G|389
6Q9A|1|1|U|390
6Q9A|1|1|A|391
6Q9A|1|1|U|392

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28