HL_6Q9A_114

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

6Q9A|1|2|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_114 not in the Motif Atlas

Geometric match to HL_8C3A_021

Geometric discrepancy: 0.3666

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Q9A|1|2|G|1133
6Q9A|1|2|G|1134
6Q9A|1|2|U|1135
6Q9A|1|2|C|1136
6Q9A|1|2|C|1137
6Q9A|1|2|G|1138
6Q9A|1|2|G|1139
6Q9A|1|2|C|1140
6Q9A|1|2|C|1141

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S9