3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
6QDW|1|b|A|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6QDW_005 not in the Motif Atlas
Homologous match to HL_4WF9_003
Geometric discrepancy: 0.1285
The information below is about HL_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

6QDW|1|b|G|123
6QDW|1|b|G|124
6QDW|1|b|A|125
6QDW|1|b|A|126
6QDW|1|b|A|127
6QDW|1|b|C|128

Current chains

Chain b
23S rRNA

Nearby chains

Chain 6
50S ribosomal protein L34
Chain t
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2189 s