HL_6QDW_013
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 6QDW|1|b|G|329, 6QDW|1|b|A|330, 6QDW|1|b|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QDW_013 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.0973
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
6QDW|1|b|G|327
6QDW|1|b|U|328
6QDW|1|b|G|329
6QDW|1|b|A|330
6QDW|1|b|C|331
6QDW|1|b|A|332
6QDW|1|b|G|333
6QDW|1|b|C|334
6QDW|1|b|C|335
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain u
- 50S ribosomal protein L24
Coloring options: