HL_6QDW_030
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GCGUAAUAGC
- Length
- 10 nucleotides
- Bulged bases
- 6QDW|1|b|A|1097, 6QDW|1|b|A|1098, 6QDW|1|b|U|1099, 6QDW|1|b|A|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QDW_030 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3635
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6QDW|1|b|G|1093
6QDW|1|b|C|1094
6QDW|1|b|G|1095
6QDW|1|b|U|1096
6QDW|1|b|A|1097
6QDW|1|b|A|1098
6QDW|1|b|U|1099
6QDW|1|b|A|1100
6QDW|1|b|G|1101
6QDW|1|b|C|1102
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain g
- 50S ribosomal protein L6
Coloring options: