HL_6QDW_033

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_033 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.0776

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6QDW|1|b|G|1283
6QDW|1|b|U|1284
6QDW|1|b|G|1285
6QDW|1|b|A|1286
6QDW|1|b|A|1287
6QDW|1|b|A|1288
6QDW|1|b|A|1289
6QDW|1|b|G|1290
6QDW|1|b|C|1291

Current chains

Chain b

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22