HL_6QDW_046
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6QDW|1|b|A|1782, 6QDW|1|b|U|1783, 6QDW|1|b|U|1784, 6QDW|1|b|A|1788
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QDW_046 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.0894
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6QDW|1|b|U|1779
6QDW|1|b|U|1780
6QDW|1|b|U|1781
6QDW|1|b|A|1782
6QDW|1|b|U|1783
6QDW|1|b|U|1784
6QDW|1|b|A|1785
6QDW|1|b|A|1786
6QDW|1|b|A|1787
6QDW|1|b|A|1788
6QDW|1|b|A|1789
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
- Chain z
- Gamma-crystallin B
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