HL_6QDW_051
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 6QDW|1|b|A|2034, 6QDW|1|b|A|2035, 6QDW|1|b|G|2036
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QDW_051 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1162
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6QDW|1|b|G|2031
6QDW|1|b|U|2032
6QDW|1|b|G|2033
6QDW|1|b|A|2034
6QDW|1|b|A|2035
6QDW|1|b|G|2036
6QDW|1|b|A|2037
6QDW|1|b|U|2038
6QDW|1|b|G|2039
6QDW|1|b|C|2040
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L3
- Chain r
- 50S ribosomal protein L21
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