HL_6QDW_051

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6QDW|1|b|A|2034, 6QDW|1|b|A|2035, 6QDW|1|b|G|2036

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_051 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1162

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6QDW|1|b|G|2031
6QDW|1|b|U|2032
6QDW|1|b|G|2033
6QDW|1|b|A|2034
6QDW|1|b|A|2035
6QDW|1|b|G|2036
6QDW|1|b|A|2037
6QDW|1|b|U|2038
6QDW|1|b|G|2039
6QDW|1|b|C|2040

Current chains

Chain b

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L32

Chain d

50S ribosomal protein L3

Chain r

50S ribosomal protein L21