HL_6QDW_055
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6QDW|1|b|A|2272, 6QDW|1|b|C|2279
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QDW_055 not in the Motif Atlas
- Homologous match to HL_5J7L_187
- Geometric discrepancy: 0.1287
- The information below is about HL_5J7L_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6QDW|1|b|C|2268
6QDW|1|b|U|2269
6QDW|1|b|A|2270
6QDW|1|b|A|2271
6QDW|1|b|A|2272
6QDW|1|b|G|2273
6QDW|1|b|A|2274
6QDW|1|b|G|2275
6QDW|1|b|U|2276
6QDW|1|b|A|2277
6QDW|1|b|A|2278
6QDW|1|b|C|2279
6QDW|1|b|G|2280
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L16
- Chain y
- 50S ribosomal protein L27
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