HL_6QDW_057
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UGCAAUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QDW_057 not in the Motif Atlas
- Homologous match to HL_5J7L_189
- Geometric discrepancy: 0.1154
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
6QDW|1|b|U|2328
6QDW|1|b|G|2329
6QDW|1|b|C|2330
6QDW|1|b|A|2331
6QDW|1|b|A|2332
6QDW|1|b|U|2333
6QDW|1|b|G|2334
6QDW|1|b|G|2335
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain f
- 50S ribosomal protein L5
- Chain m
- 50S ribosomal protein L16
- Chain v
- Transfer RNA; tRNA
- Chain y
- 50S ribosomal protein L27
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