HL_6QDW_058

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QDW_058 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.1156

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6QDW|1|b|U|2360
6QDW|1|b|G|2361
6QDW|1|b|A|2362
6QDW|1|b|C|2363
6QDW|1|b|G|2364
6QDW|1|b|G|2365

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain l

50S ribosomal protein L15

Chain y

50S ribosomal protein L27