3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
GCGAAAGC
Length
8 nucleotides
Bulged bases
6QDW|1|b|A|2380
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6QDW_059 not in the Motif Atlas
Geometric match to HL_8H9D_001
Geometric discrepancy: 0.1888
The information below is about HL_8H9D_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.1
Basepair signature
cWW-F
Number of instances in this motif group
8

Unit IDs

6QDW|1|b|G|2377
6QDW|1|b|C|2378
6QDW|1|b|G|2379
6QDW|1|b|A|2380
6QDW|1|b|A|2381
6QDW|1|b|A|2382
6QDW|1|b|G|2383
6QDW|1|b|C|2384

Current chains

Chain b
23S rRNA

Nearby chains

Chain 4
50S ribosomal protein L33
Chain a
5S ribosomal RNA; 5S rRNA
Chain o
50S ribosomal protein L18
Chain y
50S ribosomal protein L27

Coloring options:


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